Publications
Featured publications
16 Jan 2023
Pf7: An open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples
Wellcome Open Research 2023 8 22 DOI: https://doi.org/10.12688/wellcomeopenres.18681.18 Apr 2022
An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples
Wellcome Open Research 2022 7 136 DOI: https://doi.org/10.12688/wellcomeopenres.17795.124 Feb 2021
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
Wellcome Open Research 2021 6 42 DOI: 10.12688/wellcomeopenres.16168.128 Sep 2020
Genome variation and population structure among 1142 mosquitoes of the African malaria vector species Anopheles gambiae and Anopheles coluzzii
Genome Research 2020 30 1533-1546 DOI: 10.1101/gr.262790.12016 Dec 2019
Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania
Nature Communications 2019 10 5732 DOI: 10.1038/s41467-019-13480-z1 Feb 2018
Origins of the current outbreak of multidrug-resistant malaria in southeast Asia: a retrospective genetic study
The Lancet Infectious Diseases 2018 18 337-345 DOI: 10.1016/S1473-3099(18)30068-929 Nov 2017
Genetic diversity of the African malaria vector Anopheles gambiae
Nature 2017 DOI: 10.1038/nature2499527 Jun 2016
Genomic analysis of local variation and recent evolution in Plasmodium vivax
Nature Genetics 2016 48 959-964 DOI: 10.1038/ng.359911 Dec 2008
A global network for investigating the genomic epidemiology of malaria
Nature 2008 456(7223) 732-7 DOI: 10.1038/nature07632Latest publications
20 Jan 2023
Genetic Epidemiology Use Cases for Malaria Control Programmes: A Methodology
Genetic Epidemiology Use Cases for Malaria Control Programmes: A Methodology 20231 Oct 2022
Drug resistance and population structure of Plasmodium falciparum and Plasmodium vivax in the Peruvian Amazon
Scientific Reports 2022 12(1) 16474 DOI: 10.1038/s41598-022-21028-315 Jul 2022
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study
Molecular Ecology Resources 2022 22 2285 DOI: https://doi.org/10.1111/1755-0998.1362219 Apr 2022
Protective Immunity against Severe Malaria in Children Is Associated with a Limited Repertoire of Antibodies to Conserved PfEMP1 Variants
Cell Host & Microbe 2019 26(5) 579-590.e5 DOI: https://doi.org/10.1016/j.chom.2019.10.01219 Apr 2022
Global diversity and balancing selection of 23 leading Plasmodium falciparum candidate vaccine antigens
PLoS Computational Biology 2022 18(2) e1009801 DOI: https://doi.org/10.1371/journal.pcbi.10098018 Apr 2022
Plasmodium malariae and Plasmodium ovale infections and their association with common red blood cell polymorphisms in a highly endemic area of Uganda
Transactions of The Royal Society of Tropical Medicine and Hygiene 2019 113(7) 370-378 DOI: https://doi.org/10.1093/trstmh/trz0158 Apr 2022
Influence of infection on malaria-specific antibody dynamics in a cohort exposed to intense malaria transmission in northern Uganda
Parasite Immunology 2013 35(5-6) 164-73 DOI: https://doi.org/10.1111/pim.120314 Apr 2022
Artemisinin resistance in the malaria parasite, Plasmodium falciparum, originates from its initial transcriptional response
Communications Biology 2022 5 274 DOI: https://doi.org/10.1038/s42003-022-03215-04 Apr 2022
Molecular epidemiology of resistance to antimalarial drugs in the Greater Mekong subregion: an observational study
The Lancet Infectious Diseases 2020 20(12) 1470-1480 DOI: https://doi.org/10.1016/S1473-3099(20)30228-019 Feb 2022
Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis
bioRxiv 2022 DOI: https://doi.org/10.1101/2022.02.18.4809739 Dec 2021
The protective effect of sickle cell haemoglobin against severe malaria depends on parasite genotype
Malaria protection due to sickle haemoglobin depends on parasite genotype 2021 DOI: https://doi.org/10.1038/s41586-021-04288-319 Oct 2021
Increase in the proportion of Plasmodium falciparum with kelch13 C580Y mutation and decline in pfcrt and pfmdr1 mutant alleles in Papua New Guinea
Malaria Journal 2021 20 410 DOI: https://doi.org/10.1186/s12936-021-03933-610 Aug 2021
Genetic surveillance in the Greater Mekong Subregion and South Asia to support malaria control and elimination: about the data
eLife 2021 10:e62997 DOI: 10.7554/eLife.6299710 Aug 2021
Genetic surveillance in the Greater Mekong Subregion and South Asia to support malaria control and elimination: about the data
eLife 2021 10:e62997 DOI: 10.7554/eLife.6299717 Jun 2021
Mass drug administration for the acceleration of malaria elimination in a region of Myanmar with artemisinin-resistant falciparum malaria: a cluster-randomised trial
The Lancet Infectious Diseases 2021 21 1579 DOI: 10.1016/S1473-3099(20)30997-X14 Jun 2021
Using deep learning to identify recent positive selection in malaria parasite sequence data
Malaria Journal 2021 20(1) 270 DOI: 10.1186/s12936-021-03788-x7 Jun 2021
Arterolane–piperaquine–mefloquine versus arterolane–piperaquine and artemether–lumefantrine in the treatment of uncomplicated Plasmodium falciparum malaria in Kenyan children: a single-centre, open-label, randomised, non-inferiority trial
The Lancet Infectious Diseases 2021 20 30929-4 DOI: 10.1016/S1473-3099(20)30929-426 May 2021
Distinctive genetic structure and selection patterns in Plasmodium vivax from South Asia and East Africa
Nature Communications 2021 12(1) 3160 DOI: 10.1038/s41467-021-23422-325 May 2021
A. Genetic variation at the Cyp6m2 putative insecticide resistance locus in Anopheles gambiae and Anopheles coluzzii.
Malaria Journal 2021 20 234 DOI: 10.1186/s12936-021-03757-428 Apr 2021
Population genomic evidence of Plasmodium vivax Southeast Asian origin
Science Advances 2021 7(18) eabc3713 DOI: 10.1126/sciadv.abc371331 Mar 2021
Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia
Malaria Journal 2021 20 129 DOI: https://doi.org/10.1186/s12936-021-03660-y31 Mar 2021
Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia
Malaria Journal 2021 20 129 DOI: https://doi.org/10.1186/s12936-021-03660-y9 Mar 2021
Discovery of Ongoing Selective Sweeps within Anopheles Mosquito Populations Using Deep Learning.
Mol Biol Evol 2021 38 1168-1183 DOI: 10.1093/molbev/msaa25915 Feb 2021
Novel genotyping approaches to easily detect genomic admixture between the major Afrotropical malaria vector species, Anopheles coluzzii and An. gambiae
Mol Ecol Resour. 2021 DOI: 10.1111/1755-0998.1335921 Jan 2021
Resistance to pirimiphos-methyl in West African Anopheles is spreading via duplication and introgression of the Ace1 locus.
PLoS Genetics 2021 17 DOI: 10.1371/journal.pgen.100925315 Dec 2020
Emergence of artemisinin-resistant Plasmodium falciparum with kelch13 C580Y mutations on the island of New Guinea
PLoS Pathogens 2020 16(12) e1009133 DOI: https://doi.org/10.1371/journal.ppat.100913316 Nov 2020
Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast
PLoS Genetics 2020 16(11) e1009101 DOI: 10.1371/journal.pgen.100910112 Oct 2020
Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes
PLoS Neglected Tropical Diseases 2020 14(10) e0008234 DOI: 10.1371/journal.pntd.0008234- 1 of 5
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