Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

19 Jul 2012

Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O'Brien J, Djimde A, Doumbo O, Zongo I, Ouedraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su XZ, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP

Nature 2012 487(7407) 375-9 DOI: 10.1038/nature11174

Data resource

Catalogue of genetic variations (SNPs) and allele frequencies v1.0 - Download the intial catalogue of 86,000 SNPs and allele frequency data described in Manske, Miotto, et al (2012).

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About the collaboration

The sequence data used in this analysis were generated by the Wellcome Trust Sanger Institute and contributed to the MalariaGEN P. falciparum Community Project by several independent research groups. These data form part of ongoing projects that are investigating a number of scientific questions that go beyond the scope of this particular publication.